Repository revision
0:3c0120a0e35c

Repository 'seqkit_head'
hg clone https://toolshed.g2.bx.psu.edu/repos/iuc/seqkit_head

SeqKit Head tool metadata
Miscellaneous
SeqKit Head
Displays N records of a FASTA or FASTQ file
seqkit_head
toolshed.g2.bx.psu.edu/repos/iuc/seqkit_head/seqkit_head/2.9.0+galaxy0
2.9.0+galaxy0
None
True
Version lineage of this tool (guids ordered most recent to oldest)
toolshed.g2.bx.psu.edu/repos/iuc/seqkit_head/seqkit_head/2.10.0+galaxy0
toolshed.g2.bx.psu.edu/repos/iuc/seqkit_head/seqkit_head/2.9.0+galaxy0 (this tool)
seqkit_head
Requirements (dependencies defined in the <requirements> tag set)
name version type
seqkit 2.9.0 package
Additional information about this tool
#set $input_fn='input.' + str($input.ext)
        #set $output_fn='seqkithead_output.' + str($output.ext)
        ln -s '$input' '$input_fn'
        && seqkit head
        '$input_fn'
        --number '$number'
        -o '$output_fn'
        --threads \${GALAXY_SLOTS:-4}

None
False
Functional tests
name inputs outputs required files
Test-1 input: input1.fastq.gz
number: 10
name: value
input1.fastq.gz
value
Test-2 input: input1.fasta.gz
number: 10
name: value
input1.fasta.gz
value