Repository revision
9:f9326e93f5c3

Repository 'mothur_otu_hierarchy'
hg clone https://toolshed.g2.bx.psu.edu/repos/iuc/mothur_otu_hierarchy

Otu.hierarchy tool metadata
Miscellaneous
Relate OTUs at different distances
mothur_otu_hierarchy
toolshed.g2.bx.psu.edu/repos/iuc/mothur_otu_hierarchy/mothur_otu_hierarchy/1.39.5.0
1.39.5.0
mothur "#help()" | sed '7q;d' | cut -d" " -f2
True
Version lineage of this tool (guids ordered most recent to oldest)
toolshed.g2.bx.psu.edu/repos/iuc/mothur_otu_hierarchy/mothur_otu_hierarchy/1.39.5.0 (this tool)
toolshed.g2.bx.psu.edu/repos/iuc/mothur_otu_hierarchy/mothur_otu_hierarchy/1.36.1.0
mothur_otu_hierarchy
Requirements (dependencies defined in the <requirements> tag set)
name version type
mothur 1.39.5 package
Additional information about this tool
set -o pipefail; export TERM=vt100; 

## create symlinks to input datasets
ln -s '$otu' otu.dat &&

echo 'otu.hierarchy(
    list=otu.dat,
    label=$label1-$label2,
    output=$output
)'
| sed 's/ //g'  ## mothur trips over whitespace
| mothur
| tee mothur.out.log
    
None
False
Functional tests
name inputs outputs required files
Test-1 otu: amazon.an.list
label1: 0.05
label2: 0.03
savelog: True
name: value
name: value
amazon.an.list
value