| Miscellaneous |
| Version lineage of this tool (guids ordered most recent to oldest) |
| toolshed.g2.bx.psu.edu/repos/iuc/featurecounts/featurecounts/2.0.3+galaxy0 |
| toolshed.g2.bx.psu.edu/repos/iuc/featurecounts/featurecounts/2.0.1+galaxy2 (this tool) |
| toolshed.g2.bx.psu.edu/repos/iuc/featurecounts/featurecounts/2.0.1+galaxy1 |
| toolshed.g2.bx.psu.edu/repos/iuc/featurecounts/featurecounts/2.0.1 |
| toolshed.g2.bx.psu.edu/repos/iuc/featurecounts/featurecounts/1.6.4+galaxy2 |
| toolshed.g2.bx.psu.edu/repos/iuc/featurecounts/featurecounts/1.6.4+galaxy1 |
| toolshed.g2.bx.psu.edu/repos/iuc/featurecounts/featurecounts/1.6.4 |
| toolshed.g2.bx.psu.edu/repos/iuc/featurecounts/featurecounts/1.6.3+galaxy2 |
| toolshed.g2.bx.psu.edu/repos/iuc/featurecounts/featurecounts/1.6.3+galaxy1 |
| toolshed.g2.bx.psu.edu/repos/iuc/featurecounts/featurecounts/1.6.3 |
| toolshed.g2.bx.psu.edu/repos/iuc/featurecounts/featurecounts/1.6.2 |
| toolshed.g2.bx.psu.edu/repos/iuc/featurecounts/featurecounts/1.6.1.0 |
| toolshed.g2.bx.psu.edu/repos/iuc/featurecounts/featurecounts/1.6.0.7 |
| toolshed.g2.bx.psu.edu/repos/iuc/featurecounts/featurecounts/1.6.0.6 |
| toolshed.g2.bx.psu.edu/repos/iuc/featurecounts/featurecounts/1.6.0.5 |
| toolshed.g2.bx.psu.edu/repos/iuc/featurecounts/featurecounts/1.6.0.4 |
| toolshed.g2.bx.psu.edu/repos/iuc/featurecounts/featurecounts/1.6.0.3 |
| toolshed.g2.bx.psu.edu/repos/iuc/featurecounts/featurecounts/1.6.0.2 |
| toolshed.g2.bx.psu.edu/repos/iuc/featurecounts/featurecounts/1.6.0.1 |
| toolshed.g2.bx.psu.edu/repos/iuc/featurecounts/featurecounts/1.6.0 |
| toolshed.g2.bx.psu.edu/repos/iuc/featurecounts/featurecounts/1.5.3 |
| toolshed.g2.bx.psu.edu/repos/iuc/featurecounts/featurecounts/1.4.6.p5 |
| featurecounts |
| Requirements (dependencies defined in the <requirements> tag set) |
| name | version | type |
| subread | 2.0.1 | package |
| samtools | 1.11 | package |
| coreutils | 8.31 | package |
| Functional tests |
| name | inputs | outputs | required files |
| Test-1 |
alignment: featureCounts_input1.bam anno|reference_gene_sets: featureCounts_guide.gff anno|anno_select: history format: tabdel_medium include_feature_length_file: True |
name: value name: value |
featureCounts_input1.bam featureCounts_guide.gff value |
| Test-2 |
alignment: featureCounts_input1.bam anno|reference_gene_sets: featureCounts_guide.gff anno|anno_select: history format: tabdel_full include_feature_length_file: True |
name: value name: value name: value |
featureCounts_input1.bam featureCounts_guide.gff value |
| Test-3 |
alignment: featureCounts_input1.bam anno|reference_gene_sets: featureCounts_guide.gff anno|anno_select: history format: tabdel_short include_feature_length_file: True extended_parameters|exon_exon_junction_read_counting_enabled|count_exon_exon_junction_reads: True |
name: value name: value name: value |
featureCounts_input1.bam featureCounts_guide.gff value |
| Test-4 |
alignment: pairend_strandspecific_51mer_hg19_chr1_1-100000.bam anno|anno_select: builtin format: tabdel_short extended_parameters|R: True |
name: value name: value name: value |
pairend_strandspecific_51mer_hg19_chr1_1-100000.bam value |
| Test-5 |
alignment: featureCounts_input1.bam anno|anno_select: cached format: tabdel_medium include_feature_length_file: True |
name: value name: value |
featureCounts_input1.bam value |
| Test-6 |
alignment: subset.sorted.bam anno|reference_gene_sets: small.gtf anno|anno_select: history extended_parameters|R: True |
name: value |
subset.sorted.bam small.gtf value |