| Miscellaneous |
| Version lineage of this tool (guids ordered most recent to oldest) |
| toolshed.g2.bx.psu.edu/repos/iuc/featurecounts/featurecounts/1.6.4+galaxy2 |
| toolshed.g2.bx.psu.edu/repos/iuc/featurecounts/featurecounts/1.6.4+galaxy1 (this tool) |
| toolshed.g2.bx.psu.edu/repos/iuc/featurecounts/featurecounts/1.6.4 |
| toolshed.g2.bx.psu.edu/repos/iuc/featurecounts/featurecounts/1.6.3+galaxy2 |
| toolshed.g2.bx.psu.edu/repos/iuc/featurecounts/featurecounts/1.6.3+galaxy1 |
| toolshed.g2.bx.psu.edu/repos/iuc/featurecounts/featurecounts/1.6.3 |
| toolshed.g2.bx.psu.edu/repos/iuc/featurecounts/featurecounts/1.6.2 |
| toolshed.g2.bx.psu.edu/repos/iuc/featurecounts/featurecounts/1.6.1.0 |
| toolshed.g2.bx.psu.edu/repos/iuc/featurecounts/featurecounts/1.6.0.7 |
| toolshed.g2.bx.psu.edu/repos/iuc/featurecounts/featurecounts/1.6.0.6 |
| toolshed.g2.bx.psu.edu/repos/iuc/featurecounts/featurecounts/1.6.0.5 |
| toolshed.g2.bx.psu.edu/repos/iuc/featurecounts/featurecounts/1.6.0.4 |
| toolshed.g2.bx.psu.edu/repos/iuc/featurecounts/featurecounts/1.6.0.3 |
| toolshed.g2.bx.psu.edu/repos/iuc/featurecounts/featurecounts/1.6.0.2 |
| toolshed.g2.bx.psu.edu/repos/iuc/featurecounts/featurecounts/1.6.0.1 |
| toolshed.g2.bx.psu.edu/repos/iuc/featurecounts/featurecounts/1.6.0 |
| toolshed.g2.bx.psu.edu/repos/iuc/featurecounts/featurecounts/1.5.3 |
| toolshed.g2.bx.psu.edu/repos/iuc/featurecounts/featurecounts/1.4.6.p5 |
| featurecounts |
| Requirements (dependencies defined in the <requirements> tag set) |
| name | version | type |
| subread | 1.6.4 | package |
| samtools | 1.9 | package |
| coreutils | 8.31 | package |
| Functional tests |
| name | inputs | outputs | required files |
| Test-1 |
anno|reference_gene_sets: featureCounts_guide.gff anno|anno_select: history include_feature_length_file: True alignment: featureCounts_input1.bam format: tabdel_medium |
attributes: name attributes: name |
featureCounts_input1.bam featureCounts_guide.gff name |
| Test-2 |
anno|reference_gene_sets: featureCounts_guide.gff anno|anno_select: history include_feature_length_file: True alignment: featureCounts_input1.bam format: tabdel_full |
attributes: name attributes: name attributes: name |
featureCounts_input1.bam featureCounts_guide.gff name |
| Test-3 |
extended_parameters|exon_exon_junction_read_counting_enabled|count_exon_exon_junction_reads: True format: tabdel_short anno|anno_select: history include_feature_length_file: True anno|reference_gene_sets: featureCounts_guide.gff alignment: featureCounts_input1.bam |
attributes: name attributes: name attributes: name |
featureCounts_input1.bam featureCounts_guide.gff name |
| Test-4 |
anno|anno_select: builtin extended_parameters|R: True alignment: pairend_strandspecific_51mer_hg19_chr1_1-100000.bam format: tabdel_short |
attributes: name attributes: name attributes: name |
pairend_strandspecific_51mer_hg19_chr1_1-100000.bam name |
| Test-5 |
anno|anno_select: cached include_feature_length_file: True alignment: featureCounts_input1.bam format: tabdel_medium |
attributes: name attributes: name |
featureCounts_input1.bam name |
| Test-6 |
anno|anno_select: history extended_parameters|R: True alignment: subset.sorted.bam anno|reference_gene_sets: small.gtf |
attributes: name |
subset.sorted.bam small.gtf name |