Repository revision
18:3dd71eaa2909

Repository 'gecco'
hg clone https://toolshed.g2.bx.psu.edu/repos/althonos/gecco

GECCO tool metadata
Miscellaneous
GECCO
is a fast and scalable method for identifying putative novel Biosynthetic Gene Clusters (BGCs) in genomic and metagenomic data using Conditional Random Fields (CRFs).
gecco
toolshed.g2.bx.psu.edu/repos/althonos/gecco/gecco/0.9.1
0.9.1
gecco --version
True
Version lineage of this tool (guids ordered most recent to oldest)
toolshed.g2.bx.psu.edu/repos/althonos/gecco/gecco/0.9.6
toolshed.g2.bx.psu.edu/repos/althonos/gecco/gecco/0.9.1 (this tool)
toolshed.g2.bx.psu.edu/repos/althonos/gecco/gecco/0.8.10
toolshed.g2.bx.psu.edu/repos/althonos/gecco/gecco/0.8.5
toolshed.g2.bx.psu.edu/repos/althonos/gecco/gecco/0.8.4
gecco
Requirements (dependencies defined in the <requirements> tag set)
name version type
gecco 0.9.1 package
Functional tests
name inputs outputs required files
Test-1 input: BGC0001866.fna
name: value
name: value
name: value
BGC0001866.fna
value
Test-2 input: BGC0001866.fna
edge_distance: 0
name: value
name: value
name: value
BGC0001866.fna
value
Test-3 input: BGC0001866.fna
edge_distance: 0
antismash_sideload: True
name: value
name: value
name: value
name: value
BGC0001866.fna
value