Repository revision
8:2aca5aae5d10

Repository 'qiime_split_libraries'
hg clone https://toolshed.g2.bx.psu.edu/repos/iuc/qiime_split_libraries

Split libraries tool metadata
Miscellaneous
according to barcodes specified in mapping file (split_libraries)
qiime_split_libraries
toolshed.g2.bx.psu.edu/repos/iuc/qiime_split_libraries/qiime_split_libraries/1.9.1.0
1.9.1.0
split_libraries.py --version
True
Version lineage of this tool (guids ordered most recent to oldest)
toolshed.g2.bx.psu.edu/repos/iuc/qiime_split_libraries/qiime_split_libraries/1.9.1.0 (this tool)
qiime_split_libraries
Requirements (dependencies defined in the <requirements> tag set)
name version type
qiime 1.9.1 package
Functional tests
name inputs outputs required files
Test-1 max_barcode_errors: 1.5
max_ambig: 6
trim_seq_length: False
fasta: ['split_libraries/reads_1.fna', 'split_libraries/reads_2.fna']
max_homopolymer: 6
keep_barcode: True
barcode_selector|barcode_type: golay_12
start_numbering_at: 1
add_qual|qual: ['split_libraries/reads_1.qual', 'split_libraries/reads_2.qual']
truncate_ambi_bases: False
min_seq_length: 200
max_primer_mismatch: 0
map: split_libraries/mapping_file.txt
add_qual|min_qual_score: 25
keep_primer: True
retain_unassigned_reads: False
reverse_primers_test|reverse_primers:
add_qual|record_qual_scores: True
disable_bc_correction: False
disable_primers: False
max_seq_length: 1000
add_qual|qual_score_window: 0
add_qual|add_qual_test: true
add_qual|discard_bad_windows: False
attributes: name
attributes: name
attributes: name
attributes: name
split_libraries/mapping_file.txt
split_libraries/reads_1.fna
split_libraries/reads_2.fna
split_libraries/reads_1.qual
split_libraries/reads_2.qual
name