Repository revision
14:e2c36f62e22f

Repository 'openbabel_compound_convert'
hg clone https://toolshed.g2.bx.psu.edu/repos/bgruening/openbabel_compound_convert

Compound conversion tool metadata
Miscellaneous
- interconvert between various chemistry and molecular modeling data files
openbabel_compound_convert
toolshed.g2.bx.psu.edu/repos/bgruening/openbabel_compound_convert/openbabel_compound_convert/3.1.1+galaxy0
3.1.1+galaxy0
None
True
Version lineage of this tool (guids ordered most recent to oldest)
toolshed.g2.bx.psu.edu/repos/bgruening/openbabel_compound_convert/openbabel_compound_convert/3.1.1+galaxy0 (this tool)
toolshed.g2.bx.psu.edu/repos/bgruening/openbabel_compound_convert/openbabel_compound_convert/2.4.2.2.0
toolshed.g2.bx.psu.edu/repos/bgruening/openbabel_compound_convert/openbabel_compound_convert/2.4.2.1.0
toolshed.g2.bx.psu.edu/repos/bgruening/openbabel_compound_convert/openbabel_compound_convert/2.4.2.0
toolshed.g2.bx.psu.edu/repos/bgruening/openbabel_compound_convert/openbabel_compound_convert/2.4.1.0
openbabel_compound_convert
Requirements (dependencies defined in the <requirements> tag set)
name version type
openbabel 3.1.1 package
python 3.6 package
Functional tests
name inputs outputs required files
Test-1 infile: CID_2244.sdf
oformat|oformat_opts_selector: cml
name: value
CID_2244.sdf
value
Test-2 infile: CID_2244.sdf
oformat|oformat_opts_selector: fs
name: value
CID_2244.sdf
value
Test-3 infile: CID_2244.sdf
oformat|oformat_opts_selector: inchi
name: value
CID_2244.sdf
value
Test-4 infile: CID_2244.sdf
oformat|oformat_opts_selector: pdb
name: value
CID_2244.sdf
value
Test-5 infile: CID_2244.sdf
oformat|oformat_opts_selector: can
name: value
CID_2244.sdf
value
Test-6 infile: CID_2244.sdf
oformat|oformat_opts_selector: sdf
name: value
CID_2244.sdf
value
Test-7 infile: 2_mol.smi
oformat|oformat_opts_selector: pdbqt
split: True
2_mol.smi