| Miscellaneous |
| Version lineage of this tool (guids ordered most recent to oldest) |
| toolshed.g2.bx.psu.edu/repos/iuc/tb_variant_filter/tb_variant_filter/0.3.5+galaxy1 |
| toolshed.g2.bx.psu.edu/repos/iuc/tb_variant_filter/tb_variant_filter/0.1.3+galaxy0 (this tool) |
| tb_variant_filter |
| Requirements (dependencies defined in the <requirements> tag set) |
| name | version | type |
| tb_variant_filter | 0.1.3 | package |
| Functional tests |
| name | inputs | outputs | required files |
| Test-1 |
filter_options|region_filter: ['pe_ppe', 'tbprofiler', 'uvp'] input1: test_input1.vcf filter_options|show_filter_options: yes filters: region_filter |
attributes: name |
test_input1.vcf name |
| Test-2 |
filter_options|indel_window_size: 5 input1: test_input1.vcf filter_options|show_filter_options: yes filters: close_to_indel_filter |
attributes: name |
test_input1.vcf name |
| Test-3 |
input1: test_input1.vcf filter_options|show_filter_options: yes filter_options|min_percentage_alt: 95.0 filters: min_percentage_alt_filter |
attributes: name |
test_input1.vcf name |
| Test-4 |
input1: test_input2.vcf filter_options|show_filter_options: yes filter_options|min_percentage_alt: 30.0 filters: min_percentage_alt_filter |
attributes: name |
test_input2.vcf name |
| Test-5 |
input1: test_input1.vcf filter_options|show_filter_options: yes filters: min_depth_filter filter_options|min_depth: 30 |
attributes: name |
test_input1.vcf name |
| Test-6 |
input1: test_input1.vcf filters: snv_only_filter |
attributes: name |
test_input1.vcf name |