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Repository revision

Revision: 0:f83a08dff6f0

Repository 'gprofiler_snpense'

Clone this repository: hg clone https://toolshed.g2.bx.psu.edu/repos/iuc/gprofiler_snpense

gProfiler SNPense tool metadata

Miscellaneous

Name: gProfiler SNPense

Description: maps SNP rs-codes to gene names, chromosomal coordinates and variant effects

Id: gprofiler_snpense

Guid: toolshed.g2.bx.psu.edu/repos/iuc/gprofiler_snpense/gprofiler_snpense/0.1.7+galaxy10

Version: 0.1.7+galaxy10

Version command string: Rscript -e 'library(gprofiler2); packageVersion("gprofiler2")' | sed 's/\[1\] //' | sed 's/.//;s/.$//'

Display in tool panel: True

Version lineage of this tool (guids ordered most recent to oldest)

toolshed.g2.bx.psu.edu/repos/iuc/gprofiler_snpense/gprofiler_snpense/0.1.7+galaxy11

toolshed.g2.bx.psu.edu/repos/iuc/gprofiler_snpense/gprofiler_snpense/0.1.7+galaxy10 (this tool)

gprofiler_snpense

Requirements (dependencies defined in the <requirements> tag set)

Requirements:

name

version

type

r-gprofiler2

0.1.7

package

pandoc

2.7.3

package

Functional tests

name

inputs

outputs

required files

Test-1

input: example_snpense_query.txt
tool_settings|base_url: http://biit.cs.ut.ee/gprofiler_archive3/e94_eg41_p11

attributes: name

example_snpense_query.txt
name

Test-2

input: example_snpense_query.txt
filter_na: True
tool_settings|base_url: http://biit.cs.ut.ee/gprofiler_archive3/e94_eg41_p11

attributes: name

example_snpense_query.txt
name