| Miscellaneous |
| Version lineage of this tool (guids ordered most recent to oldest) |
| toolshed.g2.bx.psu.edu/repos/bgruening/hicup_deduplicator/hicup_deduplicator/0.9.2+galaxy0 (this tool) |
| toolshed.g2.bx.psu.edu/repos/bgruening/hicup_deduplicator/hicup_deduplicator/0.8.3+galaxy0 |
| toolshed.g2.bx.psu.edu/repos/bgruening/hicup_deduplicator/hicup_deduplicator/0.6.1.0 |
| toolshed.g2.bx.psu.edu/repos/bgruening/hicup_deduplicator/hicup_deduplicator/0.5.10.0 |
| toolshed.g2.bx.psu.edu/repos/bgruening/hicup_deduplicator/hicup_deduplicator/0.1.0 |
| hicup_deduplicator |
| Requirements (dependencies defined in the <requirements> tag set) |
| name | version | type |
| hicup | 0.9.2 | package |
| bowtie2 | 2.4.5 | package |
| samtools | 1.16.1 | package |
| gmp | 6.2.1 | package |
| Additional information about this tool |
#if $input_file.ext != 'sam':
ln -s '$input_file' input.bam &&
#end if
hicup_deduplicator --zip --quiet
#if $input_file.ext != 'sam':
input.bam
#else
'$input_file'
#end if
| Functional tests |
| name | inputs | outputs | required files |
| Test-1 |
input_file: dataset1_2.filt.bam |
name: value name: value name: value name: value |
dataset1_2.filt.bam value |
| Test-2 |
input_file: dataset1_2.filt.sam |
name: value name: value name: value name: value |
dataset1_2.filt.sam value |