| Miscellaneous |
| Version lineage of this tool (guids ordered most recent to oldest) |
| toolshed.g2.bx.psu.edu/repos/devteam/picard/picard_CollectGcBiasMetrics/3.1.1.0 |
| toolshed.g2.bx.psu.edu/repos/devteam/picard/picard_CollectGcBiasMetrics/2.18.2.1 (this tool) |
| toolshed.g2.bx.psu.edu/repos/devteam/picard/picard_CollectGcBiasMetrics/2.18.2.0 |
| toolshed.g2.bx.psu.edu/repos/devteam/picard/picard_CollectGcBiasMetrics/1.126.0 |
| picard_CollectGcBiasMetrics |
| Requirements (dependencies defined in the <requirements> tag set) |
| name | version | type |
| picard | 2.18.2 | package |
| r-base | 3.4.1 | package |
| Functional tests |
| name | inputs | outputs | required files |
| Test-1 |
inputFile: picard_CollectGcBiasMetrics.bam reference_source|ref_file: picard_CollectGcBiasMetrics_ref.fa reference_source|reference_source_selector: history window_size: 100 minimum_genome_fraction: 0.00005 is_bisulfite_sequenced: True assume_sorted: True |
name: value |
picard_CollectGcBiasMetrics.bam picard_CollectGcBiasMetrics_ref.fa value |