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Repository revision

Revision: 29:1aac2a13842a

Repository 'picard'

Clone this repository: hg clone https://toolshed.g2.bx.psu.edu/repos/devteam/picard

CollectWgsMetrics tool metadata

Miscellaneous

Name: CollectWgsMetrics

Description: compute metrics for evaluating of whole genome sequencing experiments

Id: picard_CollectWgsMetrics

Guid: toolshed.g2.bx.psu.edu/repos/devteam/picard/picard_CollectWgsMetrics/2.18.2.1

Version: 2.18.2.1

Version command string: None

Display in tool panel: True

Version lineage of this tool (guids ordered most recent to oldest)

toolshed.g2.bx.psu.edu/repos/devteam/picard/picard_CollectWgsMetrics/3.1.1.0

toolshed.g2.bx.psu.edu/repos/devteam/picard/picard_CollectWgsMetrics/2.18.2.1 (this tool)

toolshed.g2.bx.psu.edu/repos/devteam/picard/picard_CollectWgsMetrics/2.18.2.0

toolshed.g2.bx.psu.edu/repos/devteam/picard/picard_CollectWgsMetrics/2.7.1.0

toolshed.g2.bx.psu.edu/repos/devteam/picard/picard_CollectWgsMetrics/1.136.0

toolshed.g2.bx.psu.edu/repos/devteam/picard/picard_CollectWgsMetrics/1.126.0

picard_CollectWgsMetrics

Requirements (dependencies defined in the <requirements> tag set)

Requirements:

name

version

type

picard

2.18.2

package

Functional tests

name

inputs

outputs

required files

Test-1

inputFile: picard_CollectWgsMetrics.bam
reference_source|ref_file: picard_CollectWgsMetrics_ref.fa
reference_source|reference_source_selector: history
minimum_mapping_quality: 20
minimum_base_quality: 20
coverage_cap: 250

name: value

picard_CollectWgsMetrics.bam
picard_CollectWgsMetrics_ref.fa
value