Repository revision
29:1aac2a13842a

Repository 'picard'
hg clone https://toolshed.g2.bx.psu.edu/repos/devteam/picard

EstimateLibraryComplexity tool metadata
Miscellaneous
assess sequence library complexity from read sequences
picard_EstimateLibraryComplexity
toolshed.g2.bx.psu.edu/repos/devteam/picard/picard_EstimateLibraryComplexity/2.18.2.1
2.18.2.1
None
True
Version lineage of this tool (guids ordered most recent to oldest)
toolshed.g2.bx.psu.edu/repos/devteam/picard/picard_EstimateLibraryComplexity/2.18.2.1 (this tool)
toolshed.g2.bx.psu.edu/repos/devteam/picard/picard_EstimateLibraryComplexity/1.126.0
picard_EstimateLibraryComplexity
Requirements (dependencies defined in the <requirements> tag set)
name version type
picard 2.18.2 package
Functional tests
name inputs outputs required files
Test-1 inputFile: picard_EstimateLibraryComplexity.bam
min_identical_bases: 5
max_diff_rate: 0.03
min_mean_quality: 20
max_group_ratio: 500
read_name_regex: [a-zA-Z0-9]+:[0-9]:([0-9]+):([0-9]+):([0-9]+).*.
optical_duplicate_pixel_distance: 100
validation_stringency: LENIENT
name: value
picard_EstimateLibraryComplexity.bam
value