Repository revision
29:1aac2a13842a

Repository 'picard'
hg clone https://toolshed.g2.bx.psu.edu/repos/devteam/picard

FastqToSam tool metadata
Miscellaneous
FastqToSam
convert Fastq data into unaligned BAM
picard_FastqToSam
toolshed.g2.bx.psu.edu/repos/devteam/picard/picard_FastqToSam/2.18.2.2
2.18.2.2
None
True
Version lineage of this tool (guids ordered most recent to oldest)
toolshed.g2.bx.psu.edu/repos/devteam/picard/picard_FastqToSam/2.18.2.2 (this tool)
toolshed.g2.bx.psu.edu/repos/devteam/picard/picard_FastqToSam/1.56.0
picard_FastqToSam
Requirements (dependencies defined in the <requirements> tag set)
name version type
picard 2.18.2 package
Functional tests
name inputs outputs required files
Test-1 input_type|fastq: picard_FastqToSam_read1.fq.gz
input_type|fastq2: picard_FastqToSam_read2.fq.gz
input_type|input_type_selector: pe
read_group_name: A
sample_name: sample-a
library_name: A
platform_unit: A
platform: Illumina
sequencing_center: A
predicted_insert_size: 300
comment: A
description: A
run_date: 2014-10-10
min_q: 0
max_q: 93
strip_unpairied_mate_number: False
allow_and_ignore_empty_lines: False
validation_stringency: LENIENT
name: value
picard_FastqToSam_read1.fq.gz
picard_FastqToSam_read2.fq.gz
value