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Repository revision

Revision: 29:1aac2a13842a

Repository 'picard'

Clone this repository: hg clone https://toolshed.g2.bx.psu.edu/repos/devteam/picard

FilterSamReads tool metadata

Miscellaneous

Name: FilterSamReads

Description: include or exclude aligned and unaligned reads and read lists

Id: picard_FilterSamReads

Guid: toolshed.g2.bx.psu.edu/repos/devteam/picard/picard_FilterSamReads/2.18.2.1

Version: 2.18.2.1

Version command string: None

Display in tool panel: True

Version lineage of this tool (guids ordered most recent to oldest)

toolshed.g2.bx.psu.edu/repos/devteam/picard/picard_FilterSamReads/3.1.1.0

toolshed.g2.bx.psu.edu/repos/devteam/picard/picard_FilterSamReads/2.18.2.1 (this tool)

toolshed.g2.bx.psu.edu/repos/devteam/picard/picard_FilterSamReads/2.18.2.0

toolshed.g2.bx.psu.edu/repos/devteam/picard/picard_FilterSamReads/1.126.0

picard_FilterSamReads

Requirements (dependencies defined in the <requirements> tag set)

Requirements:

name

version

type

picard

2.18.2

package

Functional tests

name

inputs

outputs

required files

Test-1

inputFile: picard_FilterSamReads.bam
filter_type|read_list_file: picard_FilterSamReads_read_list_file.tab
filter_type|filter: includeReadList
validation_stringency: LENIENT

name: value

picard_FilterSamReads.bam
picard_FilterSamReads_read_list_file.tab
value

Test-2

inputFile: picard_FilterSamReads.bam
filter_type|read_list_file: picard_FilterSamReads_read_list_file.tab
filter_type|filter: excludeReadList
validation_stringency: LENIENT

name: value

picard_FilterSamReads.bam
picard_FilterSamReads_read_list_file.tab
value