| Miscellaneous |
| Version lineage of this tool (guids ordered most recent to oldest) |
| toolshed.g2.bx.psu.edu/repos/devteam/picard/picard_MarkDuplicates/2.18.2.4 |
| toolshed.g2.bx.psu.edu/repos/devteam/picard/picard_MarkDuplicates/2.18.2.3 (this tool) |
| toolshed.g2.bx.psu.edu/repos/devteam/picard/picard_MarkDuplicates/2.18.2.2 |
| toolshed.g2.bx.psu.edu/repos/devteam/picard/picard_MarkDuplicates/2.18.2.1 |
| toolshed.g2.bx.psu.edu/repos/devteam/picard/picard_MarkDuplicates/2.18.2.0 |
| toolshed.g2.bx.psu.edu/repos/devteam/picard/picard_MarkDuplicates/2.7.1.2 |
| toolshed.g2.bx.psu.edu/repos/devteam/picard/picard_MarkDuplicates/2.7.1.1 |
| toolshed.g2.bx.psu.edu/repos/devteam/picard/picard_MarkDuplicates/2.7.1.0 |
| toolshed.g2.bx.psu.edu/repos/devteam/picard/picard_MarkDuplicates/1.136.0 |
| toolshed.g2.bx.psu.edu/repos/devteam/picard/picard_MarkDuplicates/1.126.0 |
| picard_MarkDuplicates |
| Requirements (dependencies defined in the <requirements> tag set) |
| name | version | type |
| picard | 2.18.2 | package |
| Functional tests |
| name | inputs | outputs | required files |
| Test-1 |
inputFile: picard_MarkDuplicates.bam comments_0|comment: test-run remove_duplicates: True assume_sorted: True duplicate_scoring_strategy: SUM_OF_BASE_QUALITIES read_name_regex: .*[a-zA-Z0-9]+:[0-9]:([0-9]+):([0-9]+):([0-9]+).* optical_duplicate_pixel_distance: 100 validation_stringency: LENIENT |
name: value |
picard_MarkDuplicates.bam value |
| Test-2 |
inputFile: picard_MarkDuplicates.bam comments_0|comment: test-run remove_duplicates: False assume_sorted: True duplicate_scoring_strategy: SUM_OF_BASE_QUALITIES read_name_regex: optical_duplicate_pixel_distance: 100 validation_stringency: LENIENT |
name: value |
picard_MarkDuplicates.bam value |
| Test-3 |
inputFile: picard_MarkDuplicates.bam comments_0|comment: test-run remove_duplicates: False assume_sorted: True duplicate_scoring_strategy: SUM_OF_BASE_QUALITIES read_name_regex: optical_duplicate_pixel_distance: 100 barcode_tag: RX validation_stringency: LENIENT |
name: value |
picard_MarkDuplicates.bam value |