| Miscellaneous |
| Version lineage of this tool (guids ordered most recent to oldest) |
| toolshed.g2.bx.psu.edu/repos/devteam/picard/picard_MergeBamAlignment/2.18.2.2 |
| toolshed.g2.bx.psu.edu/repos/devteam/picard/picard_MergeBamAlignment/2.18.2.1 (this tool) |
| toolshed.g2.bx.psu.edu/repos/devteam/picard/picard_MergeBamAlignment/2.18.2.0 |
| toolshed.g2.bx.psu.edu/repos/devteam/picard/picard_MergeBamAlignment/2.7.1.0 |
| toolshed.g2.bx.psu.edu/repos/devteam/picard/picard_MergeBamAlignment/1.136.0 |
| toolshed.g2.bx.psu.edu/repos/devteam/picard/picard_MergeBamAlignment/1.126.0 |
| picard_MergeBamAlignment |
| Requirements (dependencies defined in the <requirements> tag set) |
| name | version | type |
| picard | 2.18.2 | package |
| Functional tests |
| name | inputs | outputs | required files |
| Test-1 |
reference_source|ref_file: picard_MergeBamAlignment_ref.fa reference_source|reference_source_selector: history unmapped_bam: picard_MergeBamAlignment_unaligned.bam aligned_or_read1_and_read2|aligned_bams_0|aligned_bam: picard_MergeBamAlignment_aligned.bam aligned_or_read1_and_read2|aligned_or_read1_and_read2_selector: paired_one_file clip_adapters: True is_bisulfite_sequence: False aligned_reads_only: False max_insertions_or_deletions: 1 read1_trim: 0 read2_trim: 0 aligner_proper_pair_flags: False primary_alignment_strategy: BestMapq clip_overlapping_reads: True include_secondary_alignments: True add_mate_cigar: True |
name: value |
picard_MergeBamAlignment_ref.fa picard_MergeBamAlignment_unaligned.bam picard_MergeBamAlignment_aligned.bam value |