| Miscellaneous |
| Version lineage of this tool (guids ordered most recent to oldest) |
| toolshed.g2.bx.psu.edu/repos/devteam/picard/picard_SamToFastq/2.18.2.2 (this tool) |
| toolshed.g2.bx.psu.edu/repos/devteam/picard/picard_SamToFastq/1.56.1 |
| picard_SamToFastq |
| Requirements (dependencies defined in the <requirements> tag set) |
| name | version | type |
| picard | 2.18.2 | package |
| Functional tests |
| name | inputs | outputs | required files |
| Test-1 |
inputFile: picard_SamToFastq.bam single_or_paired: pe_interleaved re_reverse: True include_non_pf_reads: False clipping_attribute: clipping_action: read1_trim: 0 read1_max_bases_to_write: -1 read2_trim: 0 read2_max_bases_to_write: -1 include_non_primary_alignments: False |
name: value |
picard_SamToFastq.bam value |
| Test-2 |
inputFile: picard_SamToFastq.bam single_or_paired: pe_sep re_reverse: True include_non_pf_reads: False clipping_attribute: clipping_action: read1_trim: 0 read1_max_bases_to_write: -1 read2_trim: 0 read2_max_bases_to_write: -1 include_non_primary_alignments: False |
name: value name: value name: value |
picard_SamToFastq.bam value |
| Test-3 |
inputFile: picard_SamToFastq_se.bam single_or_paired: se re_reverse: True include_non_pf_reads: False clipping_attribute: clipping_action: read1_trim: 0 read1_max_bases_to_write: -1 read2_trim: 0 read2_max_bases_to_write: -1 include_non_primary_alignments: False |
name: value |
picard_SamToFastq_se.bam value |