Repository revision
29:1aac2a13842a

Repository 'picard'
hg clone https://toolshed.g2.bx.psu.edu/repos/devteam/picard

Picard Collect Sequencing Artifact Metrics tool metadata
Miscellaneous
Collect metrics to quantify single-base sequencing artifacts
picard_artifact_metrics
toolshed.g2.bx.psu.edu/repos/devteam/picard/picard_artifact_metrics/2.18.2.1
2.18.2.1
None
True
Version lineage of this tool (guids ordered most recent to oldest)
toolshed.g2.bx.psu.edu/repos/devteam/picard/picard_artifact_metrics/3.1.1.0
toolshed.g2.bx.psu.edu/repos/devteam/picard/picard_artifact_metrics/2.18.2.1 (this tool)
picard_artifact_metrics
Requirements (dependencies defined in the <requirements> tag set)
name version type
picard 2.18.2 package
r-base 3.4.1 package
Functional tests
name inputs outputs required files
Test-1 inputFile: picard_ARRG_test1.bam
reference_source|ref_file: picard_BedToIntervalList_ref.fa
reference_source|reference_source_selector: history
context_size: 1
contexts_to_print: AAA,CAA,AAC,AAT,AAG
name: value
name: value
name: value
name: value
name: value
picard_ARRG_test1.bam
picard_BedToIntervalList_ref.fa
value
Test-2 inputFile: picard_ARRG_test1.bam
reference_source|reference_source_selector: cached
context_size: 1
contexts_to_print: AAA,CAA,AAC,AAT,AAG
name: value
name: value
name: value
name: value
name: value
picard_ARRG_test1.bam
value