Galaxy |

Repository revision

Revision: 33:3f254c5ced1d

Repository 'picard'

Clone this repository: hg clone https://toolshed.g2.bx.psu.edu/repos/devteam/picard

CollectInsertSizeMetrics tool metadata

Miscellaneous

Name: CollectInsertSizeMetrics

Description: plots distribution of insert sizes

Id: picard_CollectInsertSizeMetrics

Guid: toolshed.g2.bx.psu.edu/repos/devteam/picard/picard_CollectInsertSizeMetrics/3.1.1.0

Version: 3.1.1.0

Version command string: None

Display in tool panel: True

Version lineage of this tool (guids ordered most recent to oldest)

toolshed.g2.bx.psu.edu/repos/devteam/picard/picard_CollectInsertSizeMetrics/3.1.1.0 (this tool)

toolshed.g2.bx.psu.edu/repos/devteam/picard/picard_CollectInsertSizeMetrics/2.18.2.2

toolshed.g2.bx.psu.edu/repos/devteam/picard/picard_CollectInsertSizeMetrics/2.18.2.1

toolshed.g2.bx.psu.edu/repos/devteam/picard/picard_CollectInsertSizeMetrics/2.18.2.0

toolshed.g2.bx.psu.edu/repos/devteam/picard/picard_CollectInsertSizeMetrics/1.126.0

picard_CollectInsertSizeMetrics

Requirements (dependencies defined in the <requirements> tag set)

Requirements:

name

version

type

picard

3.1.1

package

Functional tests

name

inputs

outputs

required files

Test-1

inputFile: picard_CollectInsertSizeMetrics.bam
reference_source|ref_file: picard_CollectInsertSizeMetrics_ref.fa
reference_source|reference_source_selector: history
deviations: 10.0
hist_width: 500
min_pct: 0.05
assume_sorted: True
metric_accumulation_level: ALL_READS

name: value

picard_CollectInsertSizeMetrics.bam
picard_CollectInsertSizeMetrics_ref.fa
value