| Miscellaneous |
| Version lineage of this tool (guids ordered most recent to oldest) |
| toolshed.g2.bx.psu.edu/repos/devteam/picard/picard_ValidateSamFile/3.1.1.0 (this tool) |
| toolshed.g2.bx.psu.edu/repos/devteam/picard/picard_ValidateSamFile/2.18.2.2 |
| toolshed.g2.bx.psu.edu/repos/devteam/picard/picard_ValidateSamFile/2.18.2.1 |
| toolshed.g2.bx.psu.edu/repos/devteam/picard/picard_ValidateSamFile/2.18.2.0 |
| toolshed.g2.bx.psu.edu/repos/devteam/picard/picard_ValidateSamFile/1.122.0 |
| picard_ValidateSamFile |
| Requirements (dependencies defined in the <requirements> tag set) |
| name | version | type |
| picard | 3.1.1 | package |
| Functional tests |
| name | inputs | outputs | required files |
| Test-1 |
inputFile: picard_ValidateSamFile.bam reference_source|ref_file: picard_ValidateSamFile_ref.fa reference_source|reference_source_selector: history mode: VERBOSE ignore: ['INVALID_QUALITY_FORMAT', 'INVALID_FLAG_PROPER_PAIR'] max_output: 100 ignore_warnings: False validate_index: True is_bisulfite_sequenced: False |
name: value |
picard_ValidateSamFile.bam picard_ValidateSamFile_ref.fa value |