Repository revision
26:9ffcddf6f9c0

Repository 'picard'
hg clone https://toolshed.g2.bx.psu.edu/repos/devteam/picard

EstimateLibraryComplexity tool metadata
Miscellaneous
assess sequence library complexity from read sequences
picard_EstimateLibraryComplexity
toolshed.g2.bx.psu.edu/repos/devteam/picard/picard_EstimateLibraryComplexity/2.18.2.1
2.18.2.1
None
True
Version lineage of this tool (guids ordered most recent to oldest)
toolshed.g2.bx.psu.edu/repos/devteam/picard/picard_EstimateLibraryComplexity/2.18.2.1 (this tool)
toolshed.g2.bx.psu.edu/repos/devteam/picard/picard_EstimateLibraryComplexity/2.18.2.0
toolshed.g2.bx.psu.edu/repos/devteam/picard/picard_EstimateLibraryComplexity/2.7.1.0
toolshed.g2.bx.psu.edu/repos/devteam/picard/picard_EstimateLibraryComplexity/1.136.0
toolshed.g2.bx.psu.edu/repos/devteam/picard/picard_EstimateLibraryComplexity/1.126.0
picard_EstimateLibraryComplexity
Requirements (dependencies defined in the <requirements> tag set)
name version type
picard 2.18.2 package
Functional tests
name inputs outputs required files
Test-1 read_name_regex: [a-zA-Z0-9]+:[0-9]:([0-9]+):([0-9]+):([0-9]+).*.
max_diff_rate: 0.03
validation_stringency: LENIENT
max_group_ratio: 500
optical_duplicate_pixel_distance: 100
min_mean_quality: 20
min_identical_bases: 5
inputFile: picard_EstimateLibraryComplexity.bam
attributes: name
picard_EstimateLibraryComplexity.bam
name