| Miscellaneous |
| Version lineage of this tool (guids ordered most recent to oldest) |
| toolshed.g2.bx.psu.edu/repos/devteam/picard/picard_MarkDuplicatesWithMateCigar/2.18.2.2 |
| toolshed.g2.bx.psu.edu/repos/devteam/picard/picard_MarkDuplicatesWithMateCigar/2.18.2.1 (this tool) |
| toolshed.g2.bx.psu.edu/repos/devteam/picard/picard_MarkDuplicatesWithMateCigar/1.126.0 |
| picard_MarkDuplicatesWithMateCigar |
| Requirements (dependencies defined in the <requirements> tag set) |
| name | version | type |
| picard | 2.18.2 | package |
| Functional tests |
| name | inputs | outputs | required files |
| Test-1 |
comment: test-run duplicate_scoring_strategy: TOTAL_MAPPED_REFERENCE_LENGTH remove_duplicates: False read_name_regex: [a-zA-Z0-9]+:[0-9]:([0-9]+):([0-9]+):([0-9]+).*. optical_duplicate_pixel_distance: 100 minimum_distance: -1 assume_sorted: True skip_pairs_with_no_mate_cigar: True validation_stringency: LENIENT inputFile: picard_MarkDuplicatesWithMateCigar.bam |
attributes: name |
picard_MarkDuplicatesWithMateCigar.bam name |