Repository revision
26:9ffcddf6f9c0

Repository 'picard'
hg clone https://toolshed.g2.bx.psu.edu/repos/devteam/picard

ValidateSamFile tool metadata
Miscellaneous
assess validity of SAM/BAM dataset
picard_ValidateSamFile
toolshed.g2.bx.psu.edu/repos/devteam/picard/picard_ValidateSamFile/2.18.2.1
2.18.2.1
None
True
Version lineage of this tool (guids ordered most recent to oldest)
toolshed.g2.bx.psu.edu/repos/devteam/picard/picard_ValidateSamFile/2.18.2.2
toolshed.g2.bx.psu.edu/repos/devteam/picard/picard_ValidateSamFile/2.18.2.1 (this tool)
toolshed.g2.bx.psu.edu/repos/devteam/picard/picard_ValidateSamFile/1.122.0
picard_ValidateSamFile
Requirements (dependencies defined in the <requirements> tag set)
name version type
picard 2.18.2 package
Functional tests
name inputs outputs required files
Test-1 ignore: ['INVALID_QUALITY_FORMAT', 'INVALID_FLAG_PROPER_PAIR']
reference_source|reference_source_selector: history
ignore_warnings: False
max_output: 100
is_bisulfite_sequenced: False
mode: VERBOSE
reference_source|ref_file: picard_ValidateSamFile_ref.fa
inputFile: picard_ValidateSamFile.bam
validate_index: True
attributes: name
picard_ValidateSamFile.bam
picard_ValidateSamFile_ref.fa
name