Repository revision
11:efc56ee1ade4

Repository 'picard'
hg clone https://toolshed.g2.bx.psu.edu/repos/devteam/picard

CollectGcBiasMetrics tool metadata
Miscellaneous
charts the GC bias metrics
picard_CollectGcBiasMetrics
toolshed.g2.bx.psu.edu/repos/devteam/picard/picard_CollectGcBiasMetrics/1.136.0
1.136.0
None
True
Version lineage of this tool (guids ordered most recent to oldest)
toolshed.g2.bx.psu.edu/repos/devteam/picard/picard_CollectGcBiasMetrics/2.7.1.0
toolshed.g2.bx.psu.edu/repos/devteam/picard/picard_CollectGcBiasMetrics/1.136.0 (this tool)
toolshed.g2.bx.psu.edu/repos/devteam/picard/picard_CollectGcBiasMetrics/1.126.0
picard_CollectGcBiasMetrics
Requirements (dependencies defined in the <requirements> tag set)
name version type
picard 1.136 package
R 3.1.2 package
Functional tests
name inputs outputs required files
Test-1 window_size: 100
reference_source|reference_source_selector: history
assume_sorted: True
is_bisulfite_sequenced: True
minimum_genome_fraction: 0.00005
reference_source|ref_file: picard_CollectGcBiasMetrics_ref.fa
inputFile: picard_CollectGcBiasMetrics.bam
outFile: picard_CollectGcBiasMetrics_test1.tab
picard_CollectGcBiasMetrics.bam
picard_CollectGcBiasMetrics_ref.fa
picard_CollectGcBiasMetrics_test1.tab