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Repository revision

Revision: 11:efc56ee1ade4

Repository 'picard'

Clone this repository: hg clone https://toolshed.g2.bx.psu.edu/repos/devteam/picard

CollectRnaSeqMetrics tool metadata

Miscellaneous

Name: CollectRnaSeqMetrics

Description: collect metrics about the alignment of RNA to various functional classes of loci in the genome

Id: picard_CollectRnaSeqMetrics

Guid: toolshed.g2.bx.psu.edu/repos/devteam/picard/picard_CollectRnaSeqMetrics/1.136.0

Version: 1.136.0

Version command string: None

Display in tool panel: True

Version lineage of this tool (guids ordered most recent to oldest)

toolshed.g2.bx.psu.edu/repos/devteam/picard/picard_CollectRnaSeqMetrics/2.7.1.0

toolshed.g2.bx.psu.edu/repos/devteam/picard/picard_CollectRnaSeqMetrics/1.136.0 (this tool)

toolshed.g2.bx.psu.edu/repos/devteam/picard/picard_CollectRnaSeqMetrics/1.126.0

picard_CollectRnaSeqMetrics

Requirements (dependencies defined in the <requirements> tag set)

Requirements:

name

version

type

picard

1.136

package

R

3.1.2

package

Functional tests

name

inputs

outputs

required files

Test-1

rrna_fragment_percentage: 0.8
strand_specificity: NONE
reference_source|reference_source_selector: history
assume_sorted: True
metric_accumulation_level: ALL_READS
refFlat: picard_CollectRnaSeqMetrics.refFlat
minimum_length: 500
reference_source|ref_file: picard_CollectRnaSeqMetrics_ref.fa
inputFile: picard_CollectRnaSeqMetrics.bam

outFile: picard_CollectRnaSeqMetrics_test1.tab

picard_CollectRnaSeqMetrics.bam
picard_CollectRnaSeqMetrics_ref.fa
picard_CollectRnaSeqMetrics.refFlat
picard_CollectRnaSeqMetrics_test1.tab