Repository revision
11:efc56ee1ade4

Repository 'picard'
hg clone https://toolshed.g2.bx.psu.edu/repos/devteam/picard

FastqToSam tool metadata
Miscellaneous
FastqToSam
convert Fastq data into unaligned BAM
picard_FastqToSam
toolshed.g2.bx.psu.edu/repos/devteam/picard/picard_FastqToSam/1.136.0
1.136.0
None
True
Version lineage of this tool (guids ordered most recent to oldest)
toolshed.g2.bx.psu.edu/repos/devteam/picard/picard_FastqToSam/2.7.1.0
toolshed.g2.bx.psu.edu/repos/devteam/picard/picard_FastqToSam/1.136.0 (this tool)
toolshed.g2.bx.psu.edu/repos/devteam/picard/picard_FastqToSam/1.126.0
toolshed.g2.bx.psu.edu/repos/devteam/picard/picard_FastqToSam/1.56.0
picard_FastqToSam
Requirements (dependencies defined in the <requirements> tag set)
name version type
picard 1.136 package
Functional tests
name inputs outputs required files
Test-1 input_type|input_type_selector: pe
library_name: A
strip_unpairied_mate_number: False
platform_unit: A
description: A
run_date: 2014-10-10
sequencing_center: A
allow_and_ignore_empty_lines: False
max_q: 93
quality_format: Standard
comment: A
predicted_insert_size: 300
platform: Illumina
sample_name: sample-a
input_type|fastq: picard_FastqToSam_read1.fq
min_q: 0
input_type|fastq2: picard_FastqToSam_read2.fq
read_group_name: A
validation_stringency: LENIENT
outFile: picard_FastqToSam_test1.bam
picard_FastqToSam_read1.fq
picard_FastqToSam_read2.fq
picard_FastqToSam_test1.bam