| Miscellaneous |
| Version lineage of this tool (guids ordered most recent to oldest) |
| toolshed.g2.bx.psu.edu/repos/devteam/picard/picard_MarkDuplicates/2.7.1.0 |
| toolshed.g2.bx.psu.edu/repos/devteam/picard/picard_MarkDuplicates/1.136.0 (this tool) |
| toolshed.g2.bx.psu.edu/repos/devteam/picard/picard_MarkDuplicates/1.126.0 |
| picard_MarkDuplicates |
| Requirements (dependencies defined in the <requirements> tag set) |
| name | version | type |
| picard | 1.136 | package |
| Functional tests |
| name | inputs | outputs | required files |
| Test-1 |
duplicate_scoring_strategy: SUM_OF_BASE_QUALITIES remove_duplicates: True read_name_regex: [a-zA-Z0-9]+:[0-9]:([0-9]+):([0-9]+):([0-9]+).*. comments_0|comment: test-run validation_stringency: LENIENT assume_sorted: True optical_duplicate_pixel_distance: 100 inputFile: picard_MarkDuplicates.bam |
outFile: picard_MarkDuplicates_test1.bam |
picard_MarkDuplicates.bam picard_MarkDuplicates_test1.bam |