| Miscellaneous |
| Version lineage of this tool (guids ordered most recent to oldest) |
| toolshed.g2.bx.psu.edu/repos/devteam/picard/picard_MarkDuplicatesWithMateCigar/2.7.1.0 |
| toolshed.g2.bx.psu.edu/repos/devteam/picard/picard_MarkDuplicatesWithMateCigar/1.136.0 (this tool) |
| toolshed.g2.bx.psu.edu/repos/devteam/picard/picard_MarkDuplicatesWithMateCigar/1.126.0 |
| picard_MarkDuplicatesWithMateCigar |
| Requirements (dependencies defined in the <requirements> tag set) |
| name | version | type |
| picard | 1.136 | package |
| Functional tests |
| name | inputs | outputs | required files |
| Test-1 |
comment: test-run duplicate_scoring_strategy: TOTAL_MAPPED_REFERENCE_LENGTH remove_duplicates: False read_name_regex: [a-zA-Z0-9]+:[0-9]:([0-9]+):([0-9]+):([0-9]+).*. validation_stringency: LENIENT skip_pairs_with_no_mate_cigar: True assume_sorted: True minimum_distance: -1 optical_duplicate_pixel_distance: 100 inputFile: picard_MarkDuplicatesWithMateCigar.bam |
outFile: picard_MarkDuplicatesWithMateCigar_test1.bam |
picard_MarkDuplicatesWithMateCigar.bam picard_MarkDuplicatesWithMateCigar_test1.bam |