Miscellaneous |
Version lineage of this tool (guids ordered most recent to oldest) |
toolshed.g2.bx.psu.edu/repos/devteam/picard/picard_MergeBamAlignment/2.7.1.0 |
toolshed.g2.bx.psu.edu/repos/devteam/picard/picard_MergeBamAlignment/1.136.0 (this tool) |
toolshed.g2.bx.psu.edu/repos/devteam/picard/picard_MergeBamAlignment/1.126.0 |
picard_MergeBamAlignment |
Requirements (dependencies defined in the <requirements> tag set) |
name | version | type |
picard | 1.136 | package |
Functional tests |
name | inputs | outputs | required files |
Test-1 |
add_mate_cigar: True primary_alignment_strategy: BestMapq aligner_proper_pair_flags: False unmapped_bam: picard_MergeBamAlignment_unaligned.bam max_insertions_or_deletions: 1 reference_source|reference_source_selector: history include_secondary_alignments: True read1_trim: 0 read2_trim: 0 aligned_or_read1_and_read2|aligned_or_read1_and_read2_selector: paired_one_file aligned_reads_only: False aligned_or_read1_and_read2|aligned_bams_0|aligned_bam: picard_MergeBamAlignment_aligned.bam is_bisulfite_sequence: False reference_source|ref_file: picard_MergeBamAlignment_ref.fa clip_adapters: True clip_overlapping_reads: True |
outFile: picard_MergeBamAlignment_test1.bam |
picard_MergeBamAlignment_ref.fa picard_MergeBamAlignment_unaligned.bam picard_MergeBamAlignment_aligned.bam picard_MergeBamAlignment_test1.bam |