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Repository revision

Revision: 11:efc56ee1ade4

Repository 'picard'

Clone this repository: hg clone https://toolshed.g2.bx.psu.edu/repos/devteam/picard

RevertOriginalBaseQualitiesAndAddMateCigar tool metadata

Miscellaneous

Name: RevertOriginalBaseQualitiesAndAddMateCigar

Description: revert the original base qualities and add the mate cigar tag

Id: picard_RevertOriginalBaseQualitiesAndAddMateCigar

Guid: toolshed.g2.bx.psu.edu/repos/devteam/picard/picard_RevertOriginalBaseQualitiesAndAddMateCigar/1.136.0

Version: 1.136.0

Version command string: None

Display in tool panel: True

Version lineage of this tool (guids ordered most recent to oldest)

toolshed.g2.bx.psu.edu/repos/devteam/picard/picard_RevertOriginalBaseQualitiesAndAddMateCigar/2.7.1.0

toolshed.g2.bx.psu.edu/repos/devteam/picard/picard_RevertOriginalBaseQualitiesAndAddMateCigar/1.136.0 (this tool)

toolshed.g2.bx.psu.edu/repos/devteam/picard/picard_RevertOriginalBaseQualitiesAndAddMateCigar/1.126.0

picard_RevertOriginalBaseQualitiesAndAddMateCigar

Requirements (dependencies defined in the <requirements> tag set)

Requirements:

name

version

type

picard

1.136

package

Functional tests

name

inputs

outputs

required files

Test-1

max_records_to_examine: 10000
validation_stringency: LENIENT
restore_original_qualities: True
inputFile: picard_RevertOriginalBaseQualitiesAndAddMateCigar.bam

outFile: picard_RevertOriginalBaseQualitiesAndAddMateCigar_test1.bam

picard_RevertOriginalBaseQualitiesAndAddMateCigar.bam
picard_RevertOriginalBaseQualitiesAndAddMateCigar_test1.bam