Repository revision
11:efc56ee1ade4

Repository 'picard'
hg clone https://toolshed.g2.bx.psu.edu/repos/devteam/picard

SamToFastq tool metadata
Miscellaneous
SamToFastq
extract reads and qualities from SAM/BAM dataset and convert to fastq
picard_SamToFastq
toolshed.g2.bx.psu.edu/repos/devteam/picard/picard_SamToFastq/1.136.0
1.136.0
None
True
Version lineage of this tool (guids ordered most recent to oldest)
toolshed.g2.bx.psu.edu/repos/devteam/picard/picard_SamToFastq/2.7.1.0
toolshed.g2.bx.psu.edu/repos/devteam/picard/picard_SamToFastq/1.136.0 (this tool)
toolshed.g2.bx.psu.edu/repos/devteam/picard/picard_SamToFastq/1.126.0
toolshed.g2.bx.psu.edu/repos/devteam/picard/picard_SamToFastq/1.56.1
picard_SamToFastq
Requirements (dependencies defined in the <requirements> tag set)
name version type
picard 1.136 package
Functional tests
name inputs outputs required files
Test-1 clipping_attribute: null
include_non_primary_alignments: False
output_per_rg: False
read2_trim: 0
interleave: True
clipping_action: null
read1_trim: 0
read2_max_bases_to_write: -1
include_non_pf_reads: False
read1_max_bases_to_write: -1
re_reverse: True
inputFile: picard_SamToFastq.bam
report: None
picard_SamToFastq.bam