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Repository revision

Revision: 11:efc56ee1ade4

Repository 'picard'

Clone this repository: hg clone https://toolshed.g2.bx.psu.edu/repos/devteam/picard

ValidateSamFile tool metadata

Miscellaneous

Name: ValidateSamFile

Description: assess validity of SAM/BAM dataset

Id: picard_ValidateSamFile

Guid: toolshed.g2.bx.psu.edu/repos/devteam/picard/picard_ValidateSamFile/1.136.0

Version: 1.136.0

Version command string: None

Display in tool panel: True

Version lineage of this tool (guids ordered most recent to oldest)

toolshed.g2.bx.psu.edu/repos/devteam/picard/picard_ValidateSamFile/2.7.1.0

toolshed.g2.bx.psu.edu/repos/devteam/picard/picard_ValidateSamFile/1.136.0 (this tool)

toolshed.g2.bx.psu.edu/repos/devteam/picard/picard_ValidateSamFile/1.126.0

toolshed.g2.bx.psu.edu/repos/devteam/picard/picard_ValidateSamFile/1.122.0

picard_ValidateSamFile

Requirements (dependencies defined in the <requirements> tag set)

Requirements:

name

version

type

picard

1.136

package

Functional tests

name

inputs

outputs

required files

Test-1

max_output: 100
reference_source|reference_source_selector: history
ignore_warnings: False
ignore: ['INVALID_QUALITY_FORMAT', 'INVALID_FLAG_PROPER_PAIR']
is_bisulfite_sequenced: False
mode: VERBOSE
validate_index: True
reference_source|ref_file: picard_ValidateSamFile_ref.fa
inputFile: picard_ValidateSamFile.bam

outFile: picard_ValidateSamFile_test1.txt

picard_ValidateSamFile.bam
picard_ValidateSamFile_ref.fa
picard_ValidateSamFile_test1.txt