| Miscellaneous |
| Version lineage of this tool (guids ordered most recent to oldest) |
| toolshed.g2.bx.psu.edu/repos/peterjc/seq_primer_clip/seq_primer_clip/0.0.16 (this tool) |
| toolshed.g2.bx.psu.edu/repos/peterjc/seq_primer_clip/seq_primer_clip/0.0.15 |
| toolshed.g2.bx.psu.edu/repos/peterjc/seq_primer_clip/seq_primer_clip/0.0.14 |
| toolshed.g2.bx.psu.edu/repos/peterjc/seq_primer_clip/seq_primer_clip/0.0.10 |
| toolshed.g2.bx.psu.edu/repos/peterjc/seq_primer_clip/seq_primer_clip/0.0.9 |
| toolshed.g2.bx.psu.edu/repos/peterjc/seq_primer_clip/seq_primer_clip/0.0.8 |
| seq_primer_clip |
| Requirements (dependencies defined in the <requirements> tag set) |
| name | version | type |
| galaxy_sequence_utils | 1.0.1 | package |
| biopython | 1.67 | package |
| Functional tests |
| name | inputs | outputs | required files |
| Test-1 |
keep_negatives: False primer_type: Forward min_len: 35 mm: 2 input_file: MID4_GLZRM4E04_rnd30.fasta primer_fasta: dop_primers.fasta |
output_file: MID4_GLZRM4E04_rnd30_fclip.fasta |
MID4_GLZRM4E04_rnd30.fasta dop_primers.fasta MID4_GLZRM4E04_rnd30_fclip.fasta |
| Test-2 |
keep_negatives: False primer_type: Forward min_len: 35 mm: 2 input_file: MID4_GLZRM4E04_rnd30.fastqsanger primer_fasta: dop_primers.fasta |
output_file: MID4_GLZRM4E04_rnd30_fclip.fastqsanger |
MID4_GLZRM4E04_rnd30.fastqsanger dop_primers.fasta MID4_GLZRM4E04_rnd30_fclip.fastqsanger |
| Test-3 |
keep_negatives: False primer_type: Forward min_len: 35 mm: 2 input_file: MID4_GLZRM4E04_rnd30.sff primer_fasta: dop_primers.fasta |
output_file: MID4_GLZRM4E04_rnd30_fclip.sff |
MID4_GLZRM4E04_rnd30.sff dop_primers.fasta MID4_GLZRM4E04_rnd30_fclip.sff |
| Test-4 |
keep_negatives: True primer_type: Reverse min_len: 35 mm: 2 input_file: MID4_GLZRM4E04_rnd30_fclip.fasta primer_fasta: dop_primers.fasta |
output_file: MID4_GLZRM4E04_rnd30_frclip.fasta |
MID4_GLZRM4E04_rnd30_fclip.fasta dop_primers.fasta MID4_GLZRM4E04_rnd30_frclip.fasta |
| Test-5 |
keep_negatives: True primer_type: Reverse min_len: 35 mm: 2 input_file: MID4_GLZRM4E04_rnd30_fclip.fastqsanger primer_fasta: dop_primers.fasta |
output_file: MID4_GLZRM4E04_rnd30_frclip.fastqsanger |
MID4_GLZRM4E04_rnd30_fclip.fastqsanger dop_primers.fasta MID4_GLZRM4E04_rnd30_frclip.fastqsanger |
| Test-6 |
keep_negatives: True primer_type: Reverse min_len: 35 mm: 2 input_file: MID4_GLZRM4E04_rnd30_fclip.sff primer_fasta: dop_primers.fasta |
output_file: MID4_GLZRM4E04_rnd30_frclip.sff |
MID4_GLZRM4E04_rnd30_fclip.sff dop_primers.fasta MID4_GLZRM4E04_rnd30_frclip.sff |