Revision: 0:95d79f1134f0

Clone this repository: hg clone https://toolshed.g2.bx.psu.edu/repos/ebi-gxa/seurat_plot

Miscellaneous

Name: Plot

Description: with Seurat

Id: seurat_plot

Guid: toolshed.g2.bx.psu.edu/repos/ebi-gxa/seurat_plot/seurat_plot/4.0.4+galaxy0

Version: 4.0.4+galaxy0

Version command string: echo $(R --version | grep version | grep -v GNU)", seurat version" $(R --vanilla --slave -e "library(seurat); cat(sessionInfo()\$otherPkgs\$seurat\$Version)" 2> /dev/null | grep -v -i "WARNING: ")

Display in tool panel: True

Version lineage of this tool (guids ordered most recent to oldest)

toolshed.g2.bx.psu.edu/repos/ebi-gxa/seurat_plot/seurat_plot/4.0.4+galaxy0 (this tool)

seurat_plot

Requirements (dependencies defined in the <requirements> tag set)

Requirements:

name	version	type
seurat-scripts	4.0.0	package

Functional tests

name	inputs	outputs	required files
Test-1	input|rds_seurat_file: UMAP_result_integrated.rds plot_type|features: GPC5-AS1,MAFB,FAP,PPY plot_type|plot_type_selector: FeaturePlot	name: value	UMAP_result_integrated.rds value
Test-2	input|rds_seurat_file: UMAP_result_integrated.rds plot_type|features: GPC5-AS1,MAFB,FAP,PPY plot_type|plot_type_selector: VlnPlot plot_format: pdf	name: value	UMAP_result_integrated.rds value
Test-3	input|rds_seurat_file: UMAP_result_integrated.rds plot_type|features: GPC5-AS1,MAFB,FAP,PPY plot_type|plot_type_selector: RidgePlot plot_format: eps	name: value	UMAP_result_integrated.rds value
Test-4	input|rds_seurat_file: UMAP_result_integrated.rds plot_type|features: GPC5-AS1,MAFB,FAP,PPY plot_type|plot_type_selector: DotPlot plot_format: ps	name: value	UMAP_result_integrated.rds value
Test-5	input|rds_seurat_file: UMAP_result_integrated.rds plot_type|features: GPC5-AS1,MAFB,FAP,PPY plot_type|plot_type_selector: DoHeatmap	name: value	UMAP_result_integrated.rds value