Miscellaneous |
Version lineage of this tool (guids ordered most recent to oldest) |
toolshed.g2.bx.psu.edu/repos/abims-sbr/orthogroups_tool/orthogroups_tool/1.0.2 (this tool) |
orthogroups_tool |
Requirements (dependencies defined in the <requirements> tag set) |
name | version | type |
python | 2.7 | package |
numpy | 1.12.0 | package |
pandas | 0.20.0 | package |
Functional tests |
name | inputs | outputs | required files |
Test-1 |
nbseq: 2 inputs_fasta: ['output_filterassemblies/AcAcaud_trinity.fasta', 'output_filterassemblies/AmAmphi_trinity.fasta', 'output_filterassemblies/ApApomp_trinity.fasta', 'output_filterassemblies/AsAsp1_trinity.fasta'] verbosity: True orthogroups: Orthogroups.txt paralogs: True |
attributes: name |
Orthogroups.txt output_filterassemblies/AcAcaud_trinity.fasta output_filterassemblies/AmAmphi_trinity.fasta output_filterassemblies/ApApomp_trinity.fasta output_filterassemblies/AsAsp1_trinity.fasta name |
Test-2 |
nbseq: 2 inputs_fasta: ['output_filterassemblies/AcAcaud_trinity.fasta', 'output_filterassemblies/AmAmphi_trinity.fasta', 'output_filterassemblies/ApApomp_trinity.fasta', 'output_filterassemblies/AsAsp1_trinity.fasta'] verbosity: True orthogroups: Orthogroups.txt paralogs: False |
attributes: name |
Orthogroups.txt output_filterassemblies/AcAcaud_trinity.fasta output_filterassemblies/AmAmphi_trinity.fasta output_filterassemblies/ApApomp_trinity.fasta output_filterassemblies/AsAsp1_trinity.fasta name |