Repository revision
13:c097b1f83439

Repository 'chira_map'
hg clone https://toolshed.g2.bx.psu.edu/repos/iuc/chira_map

ChiRA map tool metadata
Miscellaneous
ChiRA map
map reads to trascriptome
chira_map
toolshed.g2.bx.psu.edu/repos/iuc/chira_map/chira_map/1.4.2+galaxy0
1.4.2+galaxy0
None
True
Version lineage of this tool (guids ordered most recent to oldest)
toolshed.g2.bx.psu.edu/repos/iuc/chira_map/chira_map/1.4.3+galaxy0
toolshed.g2.bx.psu.edu/repos/iuc/chira_map/chira_map/1.4.2+galaxy0 (this tool)
toolshed.g2.bx.psu.edu/repos/iuc/chira_map/chira_map/1.4.0+galaxy0
toolshed.g2.bx.psu.edu/repos/iuc/chira_map/chira_map/1.3.7+galaxy0
toolshed.g2.bx.psu.edu/repos/iuc/chira_map/chira_map/1.3.5+galaxy0
toolshed.g2.bx.psu.edu/repos/iuc/chira_map/chira_map/1.3.4+galaxy0
toolshed.g2.bx.psu.edu/repos/iuc/chira_map/chira_map/1.3.3+galaxy0
toolshed.g2.bx.psu.edu/repos/iuc/chira_map/chira_map/1.3.1+galaxy0
toolshed.g2.bx.psu.edu/repos/iuc/chira_map/chira_map/1.2.0+galaxy0
toolshed.g2.bx.psu.edu/repos/iuc/chira_map/chira_map/1.1.5+galaxy0
toolshed.g2.bx.psu.edu/repos/iuc/chira_map/chira_map/1.1.4+galaxy0
toolshed.g2.bx.psu.edu/repos/iuc/chira_map/chira_map/1.1.2+galaxy0
toolshed.g2.bx.psu.edu/repos/iuc/chira_map/chira_map/1.0.4+galaxy0
toolshed.g2.bx.psu.edu/repos/iuc/chira_map/chira_map/1.0.3+galaxy0
toolshed.g2.bx.psu.edu/repos/iuc/chira_map/chira_map/1.0.2+galaxy0
chira_map
Requirements (dependencies defined in the <requirements> tag set)
name version type
chira 1.4.2 package
Functional tests
name inputs outputs required files
Test-1 alignment|seed_length1: 12
alignment|seed_length2: 6
alignment|align_score2: 10
alignment|align_score1: 18
alignment|aligner: bwa
reference|ref_fasta2: ref2.fasta
reference|ref_fasta1: ref1.fasta
query: reads.fasta
reference|ref_type: split
attributes: name
attributes: name
reads.fasta
ref1.fasta
ref2.fasta
name
Test-2 reference|ref_fasta2: ref2.fasta
query: reads.fasta
reference|ref_fasta1: ref1.fasta
alignment|aligner: clan
reference|ref_type: split
attributes: name
reads.fasta
ref1.fasta
ref2.fasta
name