Repository revision
11:d7ec25187599

Repository 'md_converter'
hg clone https://toolshed.g2.bx.psu.edu/repos/chemteam/md_converter

Slice MD trajectories tool metadata
Miscellaneous
using the MDTraj package
md_slicer
toolshed.g2.bx.psu.edu/repos/chemteam/md_converter/md_slicer/1.9.7+galaxy0
1.9.7+galaxy0
None
True
Version lineage of this tool (guids ordered most recent to oldest)
toolshed.g2.bx.psu.edu/repos/chemteam/md_converter/md_slicer/1.9.7+galaxy0 (this tool)
toolshed.g2.bx.psu.edu/repos/chemteam/md_converter/md_slicer/1.9.6+galaxy0
toolshed.g2.bx.psu.edu/repos/chemteam/md_converter/md_slicer/1.9.5+galaxy0
toolshed.g2.bx.psu.edu/repos/chemteam/md_converter/md_slicer/1.9.3
md_slicer
Requirements (dependencies defined in the <requirements> tag set)
name version type
mdtraj 1.9.7 package
Additional information about this tool
ln -s '$traj' traj.${traj.ext} && 
        mdconvert traj.${traj.ext} -o output.${traj.ext} -i $start:$end:$stride && 
        mv output.${traj.ext} '$output'
    
None
False
Functional tests
name inputs outputs required files
Test-1 traj: traj.xtc
start: 0
end: 8
stride: 2
name: value
traj.xtc
value
Test-2 traj: traj.dcd
start: 1
end: 6
stride: 1
name: value
traj.dcd
value