| Miscellaneous |
| Version lineage of this tool (guids ordered most recent to oldest) |
| toolshed.g2.bx.psu.edu/repos/iuc/seqkit_locate/seqkit_locate/2.8.1+galaxy0 |
| toolshed.g2.bx.psu.edu/repos/iuc/seqkit_locate/seqkit_locate/2.3.1+galaxy1 (this tool) |
| toolshed.g2.bx.psu.edu/repos/iuc/seqkit_locate/seqkit_locate/2.3.1+galaxy0 |
| seqkit_locate |
| Requirements (dependencies defined in the <requirements> tag set) |
| name | version | type |
| seqkit | 2.3.1 | package |
| Functional tests |
| name | inputs | outputs | required files |
| Test-1 |
input: input1.fasta.gz conditional_pattern|pattern: ATAGAT conditional_pattern|mode: expression advanced_options|max_mismatch: 1 |
name: value |
input1.fasta.gz value |
| Test-2 |
input: input1.fasta.gz conditional_pattern|pattern: A[TU]G conditional_pattern|use_regexp: True conditional_pattern|mode: expression output_mode: --bed advanced_options|circular: True advanced_options|hide_matched: True advanced_options|ignore_case: True advanced_options|only_positive_strand: True advanced_options|id_ncbi: True |
name: value |
input1.fasta.gz value |
| Test-3 |
input: input1.fasta.gz conditional_pattern|pattern_file: motif_sequence.fasta conditional_pattern|mode: file output_mode: --gtf advanced_options|use_fmi: True |
name: value |
input1.fasta.gz motif_sequence.fasta value |
| Test-4 |
input: input1.fasta.gz conditional_pattern|pattern: ATAGAT conditional_pattern|mode: expression seq_type: dna advanced_options|max_mismatch: 1 |
name: value |
input1.fasta.gz value |