| Miscellaneous |
| Version lineage of this tool (guids ordered most recent to oldest) |
| toolshed.g2.bx.psu.edu/repos/devteam/samtool_filter2/samtool_filter2/1.8+galaxy1 (this tool) |
| toolshed.g2.bx.psu.edu/repos/devteam/samtool_filter2/samtool_filter2/1.8 |
| toolshed.g2.bx.psu.edu/repos/devteam/samtool_filter2/samtool_filter2/1.1.2 |
| toolshed.g2.bx.psu.edu/repos/devteam/samtool_filter2/samtool_filter2/1.1.1 |
| samtool_filter2 |
| Requirements (dependencies defined in the <requirements> tag set) |
| name | version | type |
| samtools | 1.8 | package |
| Functional tests |
| name | inputs | outputs | required files |
| Test-1 |
header: flag|reqBits: 0x0080 input1: bam_to_sam_in2.sam outputtype: sam flag|filter: yes |
attributes: name |
bam_to_sam_in2.sam name |
| Test-2 |
header: read_group: rg1 input1: bam_to_sam_in2.sam outputtype: sam flag|filter: no |
attributes: name |
bam_to_sam_in2.sam name |
| Test-3 |
input1: bam_to_sam_in1.sam flag|filter: yes outputtype: sam header: flag|skipBits: 0x0008 mapq: 250 |
attributes: name |
bam_to_sam_in1.sam name |