Repository revision
7:9023dcdccf72

Repository 'qiime_alpha_rarefaction'
hg clone https://toolshed.g2.bx.psu.edu/repos/iuc/qiime_alpha_rarefaction

Perform alpha rarefaction tool metadata
Miscellaneous
(alpha_rarefaction)
qiime_alpha_rarefaction
toolshed.g2.bx.psu.edu/repos/iuc/qiime_alpha_rarefaction/qiime_alpha_rarefaction/1.9.1.0
1.9.1.0
alpha_rarefaction.py --version
True
Version lineage of this tool (guids ordered most recent to oldest)
toolshed.g2.bx.psu.edu/repos/iuc/qiime_alpha_rarefaction/qiime_alpha_rarefaction/1.9.1.0 (this tool)
qiime_alpha_rarefaction
Requirements (dependencies defined in the <requirements> tag set)
name version type
qiime 1.9.1 package
Functional tests
name inputs outputs required files
Test-1 retain_intermediate_files: True
max_rare_depth: 50
otu_table_fp: alpha_rarefaction/otu_table.biom
num_steps: 2
tree_fp: alpha_rarefaction/rep_set.tre
mapping_fp: alpha_rarefaction/mapping_file.txt
min_rare_depth: 10
parallel: False
attributes: name
alpha_rarefaction/otu_table.biom
alpha_rarefaction/mapping_file.txt
alpha_rarefaction/rep_set.tre
name