| Miscellaneous |
| Version lineage of this tool (guids ordered most recent to oldest) |
| toolshed.g2.bx.psu.edu/repos/jjohnson/mixcr/mixcr_analyze/3.0.5.0 (this tool) |
| mixcr_analyze |
| Requirements (dependencies defined in the <requirements> tag set) |
| name | version | type |
| mixcr | 3.0.5 | package |
| Functional tests |
| name | inputs | outputs | required files |
| Test-1 |
impute_germline_on_export: True analyze|pipeline: shotgun imgt|species: 9606 fastq_input|fastq_input1: sample_IGH_R1.fastq fastq_input|fastq_input2: sample_IGH_R2.fastq only_productive: False starting_material: rna receptor_type: xcr imgt|library_selector: builtin fastq_input|fastq_input_selector: paired contig_assembly: True |
attributes: name attributes: name |
sample_IGH_R1.fastq sample_IGH_R2.fastq name |
| Test-2 |
impute_germline_on_export: True analyze|pipeline: amplicon analyze|primers5end: v-primers imgt|species: 9606 fastq_input|fastq_input1: sample_IGH_R1.fastq fastq_input|fastq_input2: sample_IGH_R2.fastq only_productive: False analyze|adapters: no-adapters analyze|primers3end: j-primers receptor_type: xcr starting_material: rna imgt|library_selector: builtin fastq_input|fastq_input_selector: paired contig_assembly: True |
attributes: name attributes: name |
sample_IGH_R1.fastq sample_IGH_R2.fastq name |