Miscellaneous |
Version lineage of this tool (guids ordered most recent to oldest) |
toolshed.g2.bx.psu.edu/repos/iuc/mothur_amova/mothur_amova/1.39.5.0 (this tool) |
toolshed.g2.bx.psu.edu/repos/iuc/mothur_amova/mothur_amova/1.36.1.0 |
mothur_amova |
Requirements (dependencies defined in the <requirements> tag set) |
name | version | type |
mothur | 1.39.5 | package |
Additional information about this tool |
set -o pipefail; export TERM=vt100; ## create symlinks to input datasets ln -s '$phylip' phylip.dat && ln -s '$design' design.dat && echo 'amova( phylip=phylip.dat, iters=$iters, alpha=$alpha, #if $sets: sets=${ str($sets).replace(",","-") }, #end if design=design.dat )' | sed 's/ //g' ## mothur trips over whitespace | mothur | tee mothur.out.log
Functional tests |
name | inputs | outputs | required files |
Test-1 |
phylip: amazon.dist design: amazon.design savelog: True |
name: value name: value |
amazon.dist amazon.design value |
Test-2 |
phylip: amazon.dist design: amazon.design sets: A,B savelog: True |
name: value name: value |
amazon.dist amazon.design value |