Repository revision
9:58b8ae43d27f

Repository 'mothur_amova'
hg clone https://toolshed.g2.bx.psu.edu/repos/iuc/mothur_amova

Amova tool metadata
Miscellaneous
Amova
Analysis of molecular variance
mothur_amova
toolshed.g2.bx.psu.edu/repos/iuc/mothur_amova/mothur_amova/1.39.5.0
1.39.5.0
mothur "#help()" | sed '7q;d' | cut -d" " -f2
True
Version lineage of this tool (guids ordered most recent to oldest)
toolshed.g2.bx.psu.edu/repos/iuc/mothur_amova/mothur_amova/1.39.5.0 (this tool)
toolshed.g2.bx.psu.edu/repos/iuc/mothur_amova/mothur_amova/1.36.1.0
mothur_amova
Requirements (dependencies defined in the <requirements> tag set)
name version type
mothur 1.39.5 package
Additional information about this tool
set -o pipefail; export TERM=vt100; 

## create symlinks to input datasets
ln -s '$phylip' phylip.dat &&
ln -s '$design' design.dat &&

echo 'amova(
    phylip=phylip.dat,
    iters=$iters,
    alpha=$alpha,
    #if $sets:
        sets=${ str($sets).replace(",","-") },
    #end if
    design=design.dat
)'
| sed 's/ //g'  ## mothur trips over whitespace
| mothur
| tee mothur.out.log
    
None
False
Functional tests
name inputs outputs required files
Test-1 phylip: amazon.dist
design: amazon.design
savelog: True
name: value
name: value
amazon.dist
amazon.design
value
Test-2 phylip: amazon.dist
design: amazon.design
sets: A,B
savelog: True
name: value
name: value
amazon.dist
amazon.design
value