Repository revision
1:64da677bcee2

Repository 'format_cd_hit_output'
hg clone https://toolshed.g2.bx.psu.edu/repos/bebatut/format_cd_hit_output

Format cd-hit outputs tool metadata
Miscellaneous
to rename representative sequences with cluster name and/or extract distribution inside clusters given a mapping file
format_cd_hit_output
toolshed.g2.bx.psu.edu/repos/bebatut/format_cd_hit_output/format_cd_hit_output/1.0.0+galaxy1
1.0.0+galaxy1
True
Version lineage of this tool (guids ordered most recent to oldest)
toolshed.g2.bx.psu.edu/repos/bebatut/format_cd_hit_output/format_cd_hit_output/1.0.0+galaxy1 (this tool)
toolshed.g2.bx.psu.edu/repos/bebatut/format_cd_hit_output/format_cd_hit_output/1.0.0
format_cd_hit_output
Requirements (dependencies defined in the <requirements> tag set)
No requirements defined
Additional information about this tool
python $__tool_directory__/format_cd_hit_output.py
            --input_cluster_info $input_cluster_info

            #if $rename_repr_seq.rename_repr_seq_test == "true"
                --input_representative_sequences $rename_repr_seq.input_representative_sequences
                --output_representative_sequences $output_representative_sequences
            #end if

            #if $extract_cat_distri.extract_cat_distri_test == "true"
                --input_mapping $extract_cat_distri.input_mapping
                --output_category_distribution $output_category_distribution
                $extract_cat_distri.number_sum
            #end if
    
    
None
False
Functional tests
name inputs outputs required files
Test-1 input_cluster_info: input_cluster_info.txt
rename_repr_seq|input_representative_sequences: input_representative_sequences.fasta
rename_repr_seq|rename_repr_seq_test: true
extract_cat_distri|input_mapping: input_mapping.txt
extract_cat_distri|number_sum: True
extract_cat_distri|extract_cat_distri_test: true
name: value
name: value
input_cluster_info.txt
input_representative_sequences.fasta
input_mapping.txt
value