| Miscellaneous |
| Version lineage of this tool (guids ordered most recent to oldest) |
| toolshed.g2.bx.psu.edu/repos/iuc/mothur_homova/mothur_homova/1.39.5.0 (this tool) |
| toolshed.g2.bx.psu.edu/repos/iuc/mothur_homova/mothur_homova/1.36.1.0 |
| mothur_homova |
| Requirements (dependencies defined in the <requirements> tag set) |
| name | version | type |
| mothur | 1.39.5 | package |
| Additional information about this tool |
set -o pipefail; export TERM=vt100;
## create symlinks to input datasets
ln -s '$dist' dist.dat &&
ln -s '$design' design.dat &&
echo 'homova(
phylip=dist.dat,
design=design.dat,
#if $sets:
sets=${ str($sets).replace(",","-") },
#end if
iters=$iters,
alpha=$alpha
)'
| sed 's/ //g' ## mothur trips over whitespace
| mothur
| tee mothur.out.log
| Functional tests |
| name | inputs | outputs | required files |
| Test-1 |
dist: amazon.dist design: amazon.design savelog: True |
name: value name: value |
amazon.dist amazon.design value |
| Test-2 |
dist: amazon.dist design: amazon.design sets: A savelog: True |
name: value name: value |
amazon.dist amazon.design value |