| Miscellaneous |
| Version lineage of this tool (guids ordered most recent to oldest) |
| toolshed.g2.bx.psu.edu/repos/ebi-gxa/ct_get_empirical_dist/ct_get_empirical_dist/1.1.1+galaxy0 (this tool) |
| toolshed.g2.bx.psu.edu/repos/ebi-gxa/ct_get_empirical_dist/ct_get_empirical_dist/1.1.0+galaxy2 |
| toolshed.g2.bx.psu.edu/repos/ebi-gxa/ct_get_empirical_dist/ct_get_empirical_dist/1.1.0+galaxy1 |
| toolshed.g2.bx.psu.edu/repos/ebi-gxa/ct_get_empirical_dist/ct_get_empirical_dist/1.0.0+galaxy1 |
| toolshed.g2.bx.psu.edu/repos/ebi-gxa/ct_get_empirical_dist/ct_get_empirical_dist/1.0.0+galaxy0 |
| ct_get_empirical_dist |
| Requirements (dependencies defined in the <requirements> tag set) |
| name | version | type |
| cell-types-analysis | 0.1.9 | package |
| Additional information about this tool |
get_empirical_dist.R --input-ref-file "${input_ref_file}" --label-column-ref "${label_col_ref}" --lab-cl-mapping "${lab_cl_mapping}" --num-iterations "${num_iter}" --parallel "TRUE" --num-cores \${GALAXY_SLOTS:-1} --tmpdir ./ --output-path "${output_list_path}"
#if $ontology_graph
--ontology-graph "${ontology_graph}"
#end if
#if $sample_labs
--sample-labs "${sample_labs}"
#end if
#if $exclusions
--exclusions "${exclusions}"
#end if
#if $sem_siml_metric
--semantic-sim-metric "${sem_siml_metric}"
#end if
| Functional tests |
| name | inputs | outputs | required files |
| Test-1 |
input_ref_file: reference_sdrf.tsv exclusions: exclusions.yml label_col_ref: Sample Characteristic[cell type] lab_cl_mapping: label_cl_dict.rds |
name: value |
reference_sdrf.tsv exclusions.yml label_cl_dict.rds value |