| Miscellaneous |
| Version lineage of this tool (guids ordered most recent to oldest) |
| toolshed.g2.bx.psu.edu/repos/iuc/stacks2_ustacks/stacks2_ustacks/2.4+galaxy1 |
| toolshed.g2.bx.psu.edu/repos/iuc/stacks2_ustacks/stacks2_ustacks/2.4+galaxy0 (this tool) |
| stacks2_ustacks |
| Requirements (dependencies defined in the <requirements> tag set) |
| name | version | type |
| stacks | 2.4 | package |
| Functional tests |
| name | inputs | outputs | required files |
| Test-1 |
input_type|fqinputs: list:paired collection input_type|input_type_select: paired add_log: True |
attributes: name |
demultiplexed/PopA_01.1.fq demultiplexed/PopA_01.2.fq demultiplexed/PopA_02.1.fq demultiplexed/PopA_02.2.fq name |
| Test-2 |
input_type|fqinputs: ['demultiplexed/PopA_01.1.fq', 'demultiplexed/PopA_02.1.fq'] input_type|input_type_select: single add_log: True |
attributes: name |
demultiplexed/PopA_01.1.fq demultiplexed/PopA_02.1.fq name |
| Test-3 |
input_type|fqinputs: ['demultiplexed/PopA_01.1.fq', 'demultiplexed/PopA_02.1.fq'] input_type|input_type_select: single add_log: True |
attributes: name |
demultiplexed/PopA_01.1.fq demultiplexed/PopA_02.1.fq name |
| Test-4 |
input_type|fqinputs: list:paired collection input_type|input_type_select: paired gapped|use_gapped: no snp_options|select_model|alpha: 0.1 snp_options|select_model|model_type: snp add_log: True |
attributes: name |
demultiplexed/PopA_01.1.fq demultiplexed/PopA_01.2.fq demultiplexed/PopA_02.1.fq demultiplexed/PopA_02.2.fq name |
| Test-5 |
input_type|fqinputs: list collection input_type|input_type_select: paired assembly_options|k_len: 12 gapped|min_aln_len: 0.7 assembly_options|d: True assembly_options|keep_high_cov: False gapped|max_gaps: 3 assembly_options|max_locus_stacks: 4 assembly_options|high_cov_thres: 2.0 gapped|use_gapped: yes add_log: True |
attributes: name |
demultiplexed/PopA_01.1.fq demultiplexed/PopA_02.1.fq name |