Repository revision
12:f75fb96bb742

Repository 'openms_internalcalibration'
hg clone https://toolshed.g2.bx.psu.edu/repos/galaxyp/openms_internalcalibration

InternalCalibration tool metadata
Miscellaneous
Applies an internal mass recalibration.
InternalCalibration
toolshed.g2.bx.psu.edu/repos/galaxyp/openms_internalcalibration/InternalCalibration/2.6+galaxy0
2.6+galaxy0
None
True
Version lineage of this tool (guids ordered most recent to oldest)
toolshed.g2.bx.psu.edu/repos/galaxyp/openms_internalcalibration/InternalCalibration/2.8+galaxy0
toolshed.g2.bx.psu.edu/repos/galaxyp/openms_internalcalibration/InternalCalibration/2.6+galaxy0 (this tool)
toolshed.g2.bx.psu.edu/repos/galaxyp/openms_internalcalibration/InternalCalibration/2.5+galaxy0
toolshed.g2.bx.psu.edu/repos/galaxyp/openms_internalcalibration/InternalCalibration/2.3.0
toolshed.g2.bx.psu.edu/repos/galaxyp/openms_internalcalibration/InternalCalibration/2.2.0.1
toolshed.g2.bx.psu.edu/repos/galaxyp/openms_internalcalibration/InternalCalibration/2.1.0
InternalCalibration
Requirements (dependencies defined in the <requirements> tag set)
name version type
openms 2.6 package
openms-thirdparty 2.6 package
blast 2.9.0 package
ctdopts 1.4 package
Functional tests
name inputs outputs required files
Test-1 in: InternalCalibration_1_BSA1.mzML
ppm_match_tolerance: 25.0
ms_level: 1
RT_chunking: -1.0
cal|id_in: InternalCalibration_1_BSA1_OMSSA.idXML
cal|lock_require_mono: False
cal|lock_require_iso: False
cal|model_type: linear
RANSAC|enabled: True
RANSAC|threshold: 1.0
RANSAC|pc_inliers: 30
RANSAC|iter: 500
goodness|median: 4.0
goodness|MAD: 2.0
adv_opts_cond|force: False
adv_opts_cond|test: true
adv_opts_cond|adv_opts_selector: advanced
OPTIONAL_OUTPUTS: ['ctd_out_FLAG', 'models_FLAG', 'residuals_FLAG']
name: value
name: value
name: value
name: value
InternalCalibration_1_BSA1.mzML
InternalCalibration_1_BSA1_OMSSA.idXML
value
Test-2 in: InternalCalibration_2_lockmass.mzML.gz
ppm_match_tolerance: 25.0
ms_level: 1 2 3
RT_chunking: 60.0
cal|lock_in: InternalCalibration_2_lock.csv
cal|lock_require_mono: True
cal|lock_require_iso: False
cal|model_type: linear
RANSAC|enabled: False
RANSAC|threshold: 10.0
RANSAC|pc_inliers: 30
RANSAC|iter: 70
goodness|median: 4.0
goodness|MAD: 2.0
adv_opts_cond|force: False
adv_opts_cond|test: true
adv_opts_cond|adv_opts_selector: advanced
OPTIONAL_OUTPUTS: ['ctd_out_FLAG', 'models_FLAG', 'residuals_FLAG']
name: value
name: value
name: value
name: value
InternalCalibration_2_lockmass.mzML.gz
InternalCalibration_2_lock.csv
value