Repository revision
0:51916b7025ba

Repository 'gprofiler_gost'
hg clone https://toolshed.g2.bx.psu.edu/repos/iuc/gprofiler_gost

gProfiler GOSt tool metadata
Miscellaneous
performs functional enrichment analysis of gene lists
gprofiler_gost
toolshed.g2.bx.psu.edu/repos/iuc/gprofiler_gost/gprofiler_gost/0.1.7+galaxy10
0.1.7+galaxy10
Rscript -e 'library(gprofiler2); packageVersion("gprofiler2")' | sed 's/\[1\] //' | sed 's/.//;s/.$//'
True
Version lineage of this tool (guids ordered most recent to oldest)
toolshed.g2.bx.psu.edu/repos/iuc/gprofiler_gost/gprofiler_gost/0.1.7+galaxy11
toolshed.g2.bx.psu.edu/repos/iuc/gprofiler_gost/gprofiler_gost/0.1.7+galaxy10 (this tool)
gprofiler_gost
Requirements (dependencies defined in the <requirements> tag set)
name version type
r-gprofiler2 0.1.7 package
pandoc 2.7.3 package
Functional tests
name inputs outputs required files
Test-1 input: example_query.txt
tool_settings|base_url: http://biit.cs.ut.ee/gprofiler_archive3/e94_eg41_p11
attributes: name
example_query.txt
name
Test-2 advanced_options|user_threshold: 0.1
data_sources|reg_sources: None
organism|organism: mmusculus
ordered_query: True
advanced_options|domain_scope: known
advanced_options|correction_method: fdr
advanced_options|measure_underrepresentation: True
data_sources|go_sources: ['GO:MF', 'GO:CC']
advanced_options|significant: False
tool_settings|base_url: http://biit.cs.ut.ee/gprofiler_archive3/e94_eg41_p11
data_sources|exclude_iea: True
data_sources|proto_sources: None
input: example_query_2.txt
advanced_options|numeric_ns: WIKIGENE_ACC
data_sources|bp_sources: None
advanced_options|evcodes: True
data_sources|hp_sources: None
tool_settings|export_plot: True
attributes: name
example_query_2.txt
name