Repository revision
10:6b01678ec2fc

Repository 'openms_peakpickerhires'
hg clone https://toolshed.g2.bx.psu.edu/repos/galaxyp/openms_peakpickerhires

PeakPickerHiRes tool metadata
Miscellaneous
Finds mass spectrometric peaks in profile mass spectra.
PeakPickerHiRes
toolshed.g2.bx.psu.edu/repos/galaxyp/openms_peakpickerhires/PeakPickerHiRes/2.8+galaxy0
2.8+galaxy0
None
True
Version lineage of this tool (guids ordered most recent to oldest)
toolshed.g2.bx.psu.edu/repos/galaxyp/openms_peakpickerhires/PeakPickerHiRes/3.1+galaxy0
toolshed.g2.bx.psu.edu/repos/galaxyp/openms_peakpickerhires/PeakPickerHiRes/2.8+galaxy0 (this tool)
toolshed.g2.bx.psu.edu/repos/galaxyp/openms_peakpickerhires/PeakPickerHiRes/2.6+galaxy0
toolshed.g2.bx.psu.edu/repos/galaxyp/openms_peakpickerhires/PeakPickerHiRes/2.3.0
toolshed.g2.bx.psu.edu/repos/galaxyp/openms_peakpickerhires/PeakPickerHiRes/2.2.0
toolshed.g2.bx.psu.edu/repos/galaxyp/openms_peakpickerhires/PeakPickerHiRes/2.1.0
PeakPickerHiRes
Requirements (dependencies defined in the <requirements> tag set)
name version type
openms 2.8 package
openms-thirdparty 2.8 package
omssa 2.1.9 package
blast 2.13.0 package
ctdopts 1.4 package
Functional tests
name inputs outputs required files
Test-1 in: PeakPickerHiRes_input.mzML
algorithm|signal_to_noise: 1.0
algorithm|spacing_difference_gap: 4.0
algorithm|spacing_difference: 1.5
algorithm|missing: 1
algorithm|ms_levels: 1
algorithm|report_FWHM: True
algorithm|report_FWHM_unit: relative
algorithm|SignalToNoise|max_intensity: -1
algorithm|SignalToNoise|auto_max_stdev_factor: 3.0
algorithm|SignalToNoise|auto_max_percentile: 95
algorithm|SignalToNoise|auto_mode: 0
algorithm|SignalToNoise|win_len: 200.0
algorithm|SignalToNoise|bin_count: 30
algorithm|SignalToNoise|min_required_elements: 10
algorithm|SignalToNoise|noise_for_empty_window: 1e+20
algorithm|SignalToNoise|write_log_messages: True
adv_opts|processOption: inmemory
adv_opts|force: False
adv_opts|test: true
OPTIONAL_OUTPUTS: ctd_out_FLAG
name: value
name: value
PeakPickerHiRes_input.mzML
value
Test-2 in: PeakPickerHiRes_2_input.mzML
algorithm|signal_to_noise: 1.0
algorithm|spacing_difference_gap: 4.0
algorithm|spacing_difference: 1.5
algorithm|missing: 1
algorithm|ms_levels: 1
algorithm|report_FWHM: True
algorithm|report_FWHM_unit: relative
algorithm|SignalToNoise|max_intensity: -1
algorithm|SignalToNoise|auto_max_stdev_factor: 3.0
algorithm|SignalToNoise|auto_max_percentile: 95
algorithm|SignalToNoise|auto_mode: 0
algorithm|SignalToNoise|win_len: 200.0
algorithm|SignalToNoise|bin_count: 30
algorithm|SignalToNoise|min_required_elements: 10
algorithm|SignalToNoise|noise_for_empty_window: 1e+20
algorithm|SignalToNoise|write_log_messages: True
adv_opts|processOption: inmemory
adv_opts|force: False
adv_opts|test: true
OPTIONAL_OUTPUTS: ctd_out_FLAG
name: value
name: value
PeakPickerHiRes_2_input.mzML
value
Test-3 in: PeakPickerHiRes_input.mzML
algorithm|signal_to_noise: 1.0
algorithm|spacing_difference_gap: 4.0
algorithm|spacing_difference: 1.5
algorithm|missing: 1
algorithm|ms_levels: 1
algorithm|report_FWHM: True
algorithm|report_FWHM_unit: relative
algorithm|SignalToNoise|max_intensity: -1
algorithm|SignalToNoise|auto_max_stdev_factor: 3.0
algorithm|SignalToNoise|auto_max_percentile: 95
algorithm|SignalToNoise|auto_mode: 0
algorithm|SignalToNoise|win_len: 200.0
algorithm|SignalToNoise|bin_count: 30
algorithm|SignalToNoise|min_required_elements: 10
algorithm|SignalToNoise|noise_for_empty_window: 1e+20
algorithm|SignalToNoise|write_log_messages: True
adv_opts|processOption: lowmemory
adv_opts|force: False
adv_opts|test: true
OPTIONAL_OUTPUTS: ctd_out_FLAG
name: value
name: value
PeakPickerHiRes_input.mzML
value
Test-4 in: PeakPickerHiRes_2_input.mzML
algorithm|signal_to_noise: 1.0
algorithm|spacing_difference_gap: 4.0
algorithm|spacing_difference: 1.5
algorithm|missing: 1
algorithm|ms_levels: 1
algorithm|report_FWHM: True
algorithm|report_FWHM_unit: relative
algorithm|SignalToNoise|max_intensity: -1
algorithm|SignalToNoise|auto_max_stdev_factor: 3.0
algorithm|SignalToNoise|auto_max_percentile: 95
algorithm|SignalToNoise|auto_mode: 0
algorithm|SignalToNoise|win_len: 200.0
algorithm|SignalToNoise|bin_count: 30
algorithm|SignalToNoise|min_required_elements: 10
algorithm|SignalToNoise|noise_for_empty_window: 1e+20
algorithm|SignalToNoise|write_log_messages: True
adv_opts|processOption: lowmemory
adv_opts|force: False
adv_opts|test: true
OPTIONAL_OUTPUTS: ctd_out_FLAG
name: value
name: value
PeakPickerHiRes_2_input.mzML
value
Test-5 in: PeakPickerHiRes_5_input.mzML
algorithm|signal_to_noise: 0.0
algorithm|spacing_difference_gap: 4.0
algorithm|spacing_difference: 1.5
algorithm|missing: 1
algorithm|ms_levels:
algorithm|report_FWHM: False
algorithm|report_FWHM_unit: relative
algorithm|SignalToNoise|max_intensity: -1
algorithm|SignalToNoise|auto_max_stdev_factor: 3.0
algorithm|SignalToNoise|auto_max_percentile: 95
algorithm|SignalToNoise|auto_mode: 0
algorithm|SignalToNoise|win_len: 200.0
algorithm|SignalToNoise|bin_count: 30
algorithm|SignalToNoise|min_required_elements: 10
algorithm|SignalToNoise|noise_for_empty_window: 1e+20
algorithm|SignalToNoise|write_log_messages: True
adv_opts|processOption: inmemory
adv_opts|force: False
adv_opts|test: true
OPTIONAL_OUTPUTS: ctd_out_FLAG
name: value
name: value
PeakPickerHiRes_5_input.mzML
value